- Bay Area Transportation and Land Use Coalition
 - Berkeley - Encourages public agencies, private developers, and groups of concerned citizens to promote policies and take actions leading to a Bay Area with intelligent, sustainable land use patterns and an efficient and equitable transporatation system. - BayRail Alliance
- Palo Alto - All-volunteer transit consumer group working to promote an upgraded and expanded Caltrain system to serve the S.F. Peninsula and San Jose-East Bay corridors.
- Bicycle-Friendly Berkeley Coalition
- Berkeley - Bringing together bicyclists, merchants, parents, and environmentalists and others in support of bicycling.
- California Trolley and Railroad Corporation
- San Jose - Nonprofit organisation with a mission to restore, preserve and interpret railroad equipment used in the Santa Clara Valley.
- Citizens Against Airport Pollution (CAAP)
- San Jose - Dedicated to working towards reducing airport noise, air, and water pollution at the source while San Jose International plans for expansion of facilities.
- City CarShare
- San Francisco - San Francisco car-sharing cooperative making vehicles available to people on a per-use basis.
- Commute.org - Peninsula Traffic Congestion Relief Alliance
- San Mateo County - Organisation devoted to traffic congestion relief in the San Francisco Bay Area using public transit, shuttles, carpools, cycling, and alternative transportation.
- East Bay Bicycle Coalition
- Oakland - Dedicated to improving bicycling in Alameda and Contra Costa Counties in California.
- Friends of the Berkeley Ferry
- Berkeley - Grass-roots advocates working to restore passenger ferry service to the shores of Berkeley, and promoting water transit alternatives throughout the Bay Area.
- Market Street Railway
- San Francisco - Nonprofit organisation dedicated to the preservation and operation of historic street cars in San Francisco.
- Modern Transit Society
- Promoting clean air and safety through alternatives to driving.
- Moffett Park Business & Transportation Association
- Sunnyvale - Committed to improving and promoting the environmental and economic health of the Moffett Park community through the development and promotion of transportation programmes and advocacy for initiatives of common interest.
- RESCUE Muni
- Advocacy group fighting to make Muni efficient, safe, responsive to the customers, and communicative with the passengers.
- San Francisco Bicycle Coalition
- San Francisco - Promoting the bicycle for everyday transportation. Includes newsletter, local discussions, membership details and more.
- South Bay Transportation Information
- South Bay - Postings and resources from the sbay.transportation newsgroup, which is chartered to serve for discussions of travel issues specific to the South Bay Area.
- Sustainable Mill Valley
- Mill Valley - Environmental and transportation planning group seeking to create a sustainable community.
- Transportation Management Association of San Francisco (TMASF)
- San Francisco - Promotes the use of public transit and ridesharing.
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