- Bioinformatics Centre (DIC) - University of Pune
 - Provides information in the area of biotechnology with an emphasis on virology, protein and nucleic acid sequences and structures, microbial strain data, and also access to related areas through networks. - Bioinformatics Factsheet
- A basic introduction to the science from the National Centre for Biotechnology Information.
- Bioinformatics Institute of India@
- Bioinformatics.Org
- Organisation serves the scientific and educational needs of bioinformatic practitioners and the general public.
- Bioinformatics.vg
- Provides an extensive directory of bioinformatics and molecular biology software tools and resources for sequence analysis, genomics, and proteomics.
- Biology Student Workbench
- Bioinformatics education project of the Education and Outreach division of the Partnership for Advanced Computing Infrastructure.
- Center for Biological Sequence Analysis - Technical University of Denmark
- Analysis of DNA, RNA, and protein sequences. Prediction servers and databases.
- Cytoscape: Analyzing and Visualizing Biological Network Data
- An open source bioinformatics software platform for visualising molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
 Ensembl Project
- Joint project between EMBL-EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.- European Bioinformatics Institute (EBI)@
- Gene Codes Corporation
- Producer of Sequencher desktop DNA sequence assembly and analysis software for Mac and PC.
- Laboratory of Computational Genomics - Donald Danforth Plant Science Center
- Jeffrey Skolnick's research group developing a series of tools to be able to identify protein function from sequence based on the sequence-structure-function paradigm.
- Oxford Journals: Bioinformatics
- Features scientific papers and review articles in the fields of computational molecular biology, biological databases, and genome bioinformatics.
- Puneet Wadhwa's Bioinformatics Blog
- Blog dedicated to bioinformatics from a Open Biosystems employee based in Alabama.
- SBDS (Southampton Bioinformatics Data Server)
- Scientific American: The Bioinformatics Gold Rush
- Looks at the industry that has emerged around turning raw genome data into knowledge for making new drugs.
- University of Colorado Bioinformatics
- Includes links and instructions to bioinformatic tools and resources.
- University of Kansas - Bioinformatics Program
- Promoting bioinformatics in the state of Kansas, through the K-BRIN grant. Included are problem sets, news, and a BLAST server.
- VirOligo Compilation Lab
- Virus-specific oligonucleotides from published literature for virus detection by PCR or hybridization.
- Weizmann Institute of Science (Israel) - Genome and Bioinformatics@
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