- BioMagResBank
 - A repository for data from NMR spectroscopy on proteins, peptides, and nucleic acids. - ExPASy Molecular Biology Server
- Expert Protein Analysis System proteomics server of the Swiss Institute of Bioinformatics, dedicated to the analysis of protein sequences and structures, as well as 2D PAGE.
- IMGT: The International Immunogenetics Database
- Specialises in immunoglobulins, T-cell receptors, and major histocompatibility complex molecules of all vertebrate species; created by Marie-Paule Lefranc.
- Mamba
- Links across the WWW to software for biologists.
- Molecular Biological Server
- Data bases, systems, and programmes on molecular biology and genetics.
- Motif BioInformatics Server
- Have developed advanced profile and sequence motifs for representing structural and functional aspects of proteins (EMOTIF, EMATRIX, and 3MOTIF). These methods can be used for assigning functions to unidentified protein sequences (Proteomes).
- PEDANT: Protein Extraction, Description, and ANalysis Tool
- A software system for completely automatic and exhaustive analysis of protein sequence sets, from individual sequences to complete genomes.
 SBDS (Southampton Bioinformatics Data Server)
- SignalP Server
- Used for prediction of secretory signal peptides and their cleavage sites in eukaryotes and prokaryotes.
- SWISS-PROT
- Curated protein sequence database which strives to provide a high level of annotations, a minimal level of redundancy, and high level of integration with other databases.
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