- Aquatic Biomes
 - Overview of the major marine and the freshwater regions. - Aquatic Ecosystems Group - University of Glasgow
- Research covers many aspects of the biology of aquatic organisms, from their respiratory physiology to their conservation and community structure.
- Aquatic Ecosystems Research Group - Murdoch University
- Examines various aspects of wetlands, riverine, and estuarine systems and their invertebrate biota.
- Aquatic: The Wild Blue Yonder
- Quickly describes the Earth's major marine and freshwater biomes.
- Bioindicators of Aquatic Ecosystem Stress
- Programme designed to assess and evaluate the effects that environmental stressors such as contaminants have on the health of aquatic organisms, populations, and communities.
- Ecopath With Ecosim
- Ecological modelling software for sustainable management of aquatic ecosystems.
- Environment Canada: Aquatic Ecosystems
- Lists general and technical publications, teacher resources, and other agencies.
- Lehigh University - Graduate Study in Aquatic Ecosystems
- Integral part of the Pocono Comparative Lakes Programme (PCLP).
- Restoration of Aquatic Ecosystems: Science, Technology, and Public Policy
- Online book, outlining a national strategy for aquatic restoration and features case studies of aquatic restoration activities from around the U.S.
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