- AMIQ Institute
 - Committed to the restoration, preservation, and protection of the biological and cultural diversity of the Bering Sea region. - Aquatic Ecology Group (AEG) - University of Toronto
- Directed towards an increased understanding of the structure and productivity of aquatic ecosystems.
 Aquatic Research and Management
- Offers articles, research, and angling diary of Dr. Paul Garner, specialist in the behaviour and population dynamics of European freshwater fish.- Caribbean Marine Research Center
- Center for Applied Aquatic Ecology - North Carolina State University
- Focuses on the nutritional ecology and toxic activity of Pfiesteria species, and their acute and chronic impacts on fish health.
- Center for Aquatic Ecology - Illinois Natural History Survey
- Conducts basic and applied research investigating all aspects of the biology of the flora and fauna associated with aquatic ecosystems.
- Center for Freshwater Studies - University of Alabama
- Interdisciplinary research and education in biogeochemistry, biodiversity, conservation, ecology, geography, hydrology, water policy/law, and resources management.
- Center for Tropical Marine Ecology - University of Bremen
- Activities document the continuing international research interest in tropical marine ecosystems, their resources, and their vulnerability to environmental and climatic changes.
- Centre for Ecology & Hydrology (CEH)@
- Centro Ecológico Akumal
- Provides academic studies, ocean research, marine studies, environmental education, cultural exchange, coral reef research, and sea turtle protection.
- Environmental Management of Drinking Water - University of Victoria
- Provides limnological and ecological expertise and information to water utilities in order that they can make environmentally sound management decisions to preserve the quality of their source water.
- Gulf Ecology Division - EPA National Health and Environmental Effects Research Laboratory
- Responsible for study of the physical, chemical, and biological dynamics of coastal wetlands, estuaries, and near-shore marine environments.
- Institute for Hydrobiology - Technische Universität Dresden@
- Italian Institute of Hydrobiology
- Studying the physical properties of lakes and their watershed, ecophysiology of lacustrine food webs, lake eutrophication and evolution, pollutants, and management.
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries
- Conducting research on limnic ecosystems.
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