- Tower House Bed and Breakfast
 - Queen Anne style accommodation for adults only on 10 acres overlooking San Juan Valley. Featuring two suites with private baths and sitting rooms. - Hillside House Bed and Breakfast
- Contemporary house with views of the harbour entrance.
- Highland Inn
- Featuring two spacious guest suites overlooking Victoria B.C.
- States Inn
- Located in the heart of San Juan Islands, 7.1 miles from the city of Friday Harbour.
- Tucker House Inn
- Offers San Juan Island accommodation accommodations in the Friday Harbour.
- Trumpeter Inn
- Located in the San Juan Islands; enjoy whales, kayaking, bicycling, and more.
- Halvorsen House
- Offers rooms, suites and a house on San Juan Island two miles from the ferry.
- Wildwood Manor
- Queen Anne home set on a knoll above Roche Harbour Road with a view to the north of Waldron Island and British Columbia.
- Pear Point Inn
- Located near local beaches.
- Oak Ridge
- Farmhouse that sits atop a ridge of ancient Oak Trees.
- Olympic Lights
- 1895 Victorian farmhouse that sits on an open meadow.
- Harrison House
- Located near the Friday Harbour, San Juan Island ferry terminal.
- Arbutus Lodge
- Features hot tub and gourmet breakfast.
- Wharfside Bed and Breakfast
- Stay aboard a 60-foot, ketch-rigged motorsailer, fully seaworthy and remains at the dock for stays, or leaves for short sunset cruises.
- Friday's Historical Inn
- 11 guest rooms in a downtown historic inn.
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